Package index • cluefish

All functions

clustrenrich(): Cluster-specific functional enrichment and whole annotation retrieval

clustrfiltr(): Filter clusters based on their gene-set size

clustrfusion(): Fusion of clusters based on shared cluster enrichment

curves_to_pdf(): Generate curvesplots per-cluster to PDF

dl_regulation_data(): Download transcription factors and co-factors data from AnimalTFDB

getclustrs(): Retreive and integrate the clustered Protein-Protein Interaction Network (PPIN) data

getids(): Retrieve gene identifiers from Ensembl/Ensembl Genomes

getregs(): Retrieve the regulatory status of deregulated genes

lonelyfishing(): Fishing of lonely genes sharing annotations with existing clusters

render_qmd(): Render and Move Quarto Documents

results_to_csv(): Generate a workflow summary CSV file

simplenrich(): Simple functional enrichment with added filtering